Phylogenetics

Latest research

1. Comparative Analysis Provides Insights into the Phylogeny of Chamidae (Bivalvia: Veneroida) Through a Mitogenomic Approach

   • Jing Li
   • Yu Wang
   • Qi Li

   in Journal of Ocean University of China

   Article 08 December 2025

2. Comparative mitogenome sequences and phylogenetic relationships of two mongooses (Herpestes ichneumon and Urva auropunctata) from Türkiye and Iraq

   • Barış Yıldız
   • Ahmet Yesari Selçuk
   • Osman İbiş

   in Mammal Research

   Article 04 December 2025

   

3. Evaluating the early diversification of Yersinia pestis and its phylogeographic expansion over 96 years of evolution in Madagascar

   • Lovasoa Nomena Randriantseheno
   • Jason W. Sahl
   • Minoarisoa Rajerison

   in Communications Biology

   Article Open access 26 November 2025

   

4. Molecular phylogeny and species delimitation unravel climate-driven diversification and cryptic radiation in Iranian steppe Vipers (Vipera ursinii-renardi complex)

   • Mohammad Faridi
   • Seyed Ali Jozi
   • Mohammad Kaboli

   in Scientific Reports

   Article Open access 26 November 2025

   

5. The mitogenome of a swimming-behavior file shell reveals the phylogenetic relationships of Limida (Bivalvia: Pteriomorphia)

   • Yu Zhang
   • Minghua Sun
   • Yi Yang

   in Molecular Biology Reports

   Article 24 November 2025

   

6. Reconstructing Evolutionary Histories with Hierarchical Orthologous Groups

   • Garance Sarton-Lohéac
   • Nikolai Romashchenko
   • Natasha Glover

   in Journal of Molecular Evolution

   Article Open access 21 November 2025

   

7. Current status of phylogenetic studies on ciliated protists (Alveolata, Protozoa, Ciliophora) by the OUC-group: advances, challenges and future perspectives

   • Feng Gao
   • Yang Bai
   • Weibo Song

   in Marine Life Science & Technology

   Article Open access 21 November 2025

   

8. Genome Sequence Analysis Reveals Polyphyly in the Genus Pseudaestuariivita and Supports Reclassification of the Species Pseudaestuariivita rosea as Parasulfitobacter roseus comb.nov

   • Mengdan He
   • Xiaokun Xu
   • Ang Liu

   in Current Microbiology

   Article 20 November 2025

   

9. An atypical case of infection with the Mpox virus clade IIb lineage C.1 – clinical and virological findings

   • Pawel Zmora
   • Blazej Rozplochowski
   • Arleta Kowala-Piaskowska

   in European Journal of Clinical Microbiology & Infectious Diseases

   Article Open access 18 November 2025

   

10. MEGA 12.1: Cross-Platform Release for macOS and Linux Operating Systems

    • Glen Stecher
    • Michael Suleski
    • Sudhir Kumar

    in Journal of Molecular Evolution

    Article 17 November 2025

    

11. A novel lineage of large aquatic bacteriophages identified through metagenomics

    • Carolina Perez-Hernandez
    • Joud Aldaroub
    • Frank O. Aylward

    in Archives of Virology

    Article Open access 15 November 2025

    

12. Phylogenetic analysis of the extant and fossil Colobinae

    • Julia L. Arenson

    in Journal of Mammalian Evolution

    Article 15 November 2025

    

13. Comparative plastomes and phylogenetic relationships of Breynia, Glochidion, Phyllanthus, Sauropus, and Synostemon from plastomes and ITS

    • Ran Wei
    • Qiang Li

    in Genetica

    Article 12 November 2025

    

14. Seven new species of scaleworms (Lepidonotopodini, Polynoidae, Polychaeta, Annelida) from deep-sea chemosynthetic-based ecosystems

    • Avery S. Hiley
    • Kiirah R. Green
    • Greg W. Rouse

    in Marine Biodiversity

    Article Open access 12 November 2025

    

15. Molecular phylogenies provide insights into the evolutionary relationships of the Spirurida (Nematoda), with special emphasis on the superfamily Physalopteroidea

    • Meng Sun
    • Muhammad Amjad Yousaf
    • Liang Li

    in Parasites & Vectors

    Article Open access 10 November 2025

    

16. Integrative taxonomy of the genus Longidorus (Nematoda: Longidoridae) reveals two new species in the Mediterranean Basin

    • Rosana Salazar-García
    • Juan E. Palomares-Rius
    • Antonio Archidona-Yuste

    in Zoological Letters

    Article Open access 07 November 2025

    

17. New insights into the phylogenetic and biogeographic analysis of Elaeocarpus (Elaeocarpaceae) in China, and further consolidated ‘Acronodia’ as a distinct group

    • Yihui Wang
    • Yifei Xie
    • Zhixiang Zhang

    in BMC Plant Biology

    Article Open access 07 November 2025

    

18. Comparative analysis of complete mitochondrial genomes of fourteen moray eels (Anguilliformes: Muraenidae) and primary exploration of their phylogenetic relationship and temperature adaptation

    • Wei Tan
    • Fuxiao Chen
    • Hongtao Liu

    in BMC Ecology and Evolution

    Article Open access 06 November 2025

    

19. Assessing phylogenetic confidence at pandemic scales

    • Nicola De Maio
    • Nhan Ly-Trong
    • Nick Goldman

    in Nature

    Article Open access 05 November 2025

    

20. A beginner’s guide to tree thinking

    • Bethany Allen

    in Nature Ecology & Evolution

    Article 04 November 2025

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